Variant report

Variant	rs4716007
Chromosome Location	chr6:15887560-15887561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15877292..15880504-chr6:15885962..15890357,4	K562	blood:
2	chr6:15867696..15869985-chr6:15886465..15888191,2	K562	blood:
3	chr6:15868485..15870238-chr6:15886465..15888111,2	K562	blood:
4	chr6:15877602..15881521-chr6:15885962..15888404,4	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1569590	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap]
rs1569591	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1569592	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2021900	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2022462	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2066399	0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2066400	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2066401	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2092340	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2327925	0.87[ASN][1000 genomes]
rs4113597	0.91[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4712263	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4716008	0.99[ASN][1000 genomes]
rs4716009	0.85[CEU][hapmap];0.91[CHB][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4716010	0.98[ASN][1000 genomes]
rs6459417	0.80[CEU][hapmap]
rs6459420	0.94[YRI][hapmap]
rs6459422	0.99[ASN][1000 genomes]
rs6459423	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6459425	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6906138	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6913590	0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6925815	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6932456	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6939072	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6940343	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs726966	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs760958	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs760959	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs760960	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7753278	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7753426	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7753453	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7754469	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7754613	0.95[ASN][1000 genomes]
rs879299	0.98[ASN][1000 genomes]
rs881018	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs909846	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9296992	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs932377	0.86[CEU][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9349989	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9358073	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9396613	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9396614	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15880600-15887600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:15880600-15887600	Weak transcription	Right Atrium	heart
3	chr6:15883400-15895800	Weak transcription	Esophagus	oesophagus
4	chr6:15883600-15887600	Weak transcription	Adipose Nuclei	Adipose
5	chr6:15883800-15887600	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:15885800-15891000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:15886000-15887600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:15886200-15887600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:15886800-15887800	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr6:15887000-15889800	Enhancers	Primary B cells from peripheral blood	blood
11	chr6:15887200-15887600	Enhancers	GM12878-XiMat	blood
12	chr6:15887400-15887800	Enhancers	Lung	lung
13	chr6:15887400-15888400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:15887400-15888400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:15887400-15888600	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr6:15887400-15888600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:15887400-15889000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr6:15887400-15889000	Enhancers	Primary B cells from cord blood	blood
19	chr6:15887400-15889000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:15887400-15889600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:15887400-15889600	Enhancers	Spleen	Spleen
22	chr6:15887400-15890000	Enhancers	Primary hematopoietic stem cells	blood
23	chr6:15887400-15890400	Enhancers	K562	blood

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