Variant report

Variant	rs4716009
Chromosome Location	chr6:15898009-15898010
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15892800..15899119-chr6:16126817..16134608,27	K562	blood:
2	chr6:15892259..15903343-chr6:16127919..16134608,26	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1569590	1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.86[YRI][hapmap]
rs1569591	1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1569592	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.87[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2021900	1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2022462	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066399	0.88[ASN][1000 genomes]
rs2066400	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2066401	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2092340	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.87[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2327925	0.87[ASN][1000 genomes]
rs4113597	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.87[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712263	1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4716007	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4716008	0.98[ASN][1000 genomes]
rs4716010	1.00[ASN][1000 genomes]
rs6459422	0.98[ASN][1000 genomes]
rs6459423	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6459425	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913590	1.00[CEU][hapmap];0.90[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6925815	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6932456	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939072	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6940343	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs726966	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.87[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs760958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs760959	0.91[ASN][1000 genomes]
rs760960	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7753278	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7753426	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7753453	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7754469	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7754613	0.95[ASN][1000 genomes]
rs879299	1.00[ASN][1000 genomes]
rs881018	0.90[CHB][hapmap];0.98[ASN][1000 genomes]
rs909846	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296992	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs932377	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9349989	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9358073	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396613	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396614	1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.85[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15894400-15903000	Enhancers	Placenta	Placenta
2	chr6:15894600-15901400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:15895400-15898800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:15895800-15898600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr6:15895800-15899000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:15895800-15899000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:15896000-15898600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:15896000-15899000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:15896000-15899000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr6:15896200-15898200	Enhancers	Duodenum Mucosa	Duodenum
11	chr6:15896200-15899000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr6:15896400-15898200	Enhancers	Fetal Muscle Leg	muscle
13	chr6:15896600-15898600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr6:15897000-15898800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr6:15897200-15898200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr6:15897200-15898400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:15897200-15898600	Enhancers	Placenta Amnion	Placenta Amnion
18	chr6:15897200-15899200	Enhancers	Primary B cells from peripheral blood	blood
19	chr6:15897200-15901000	Enhancers	GM12878-XiMat	blood
20	chr6:15897400-15898200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:15897400-15898400	Enhancers	Spleen	Spleen
22	chr6:15897400-15899000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:15897400-15899000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:15897600-15898200	Enhancers	Fetal Lung	lung
25	chr6:15897800-15898200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:15897800-15898200	Enhancers	Adipose Nuclei	Adipose
27	chr6:15897800-15898400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:15897800-15898400	Enhancers	HUVEC	blood vessel
29	chr6:15897800-15898600	Weak transcription	Pancreas	Pancrea
30	chr6:15897800-15901400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:15897800-15912200	Weak transcription	Right Atrium	heart
32	chr6:15898000-15898200	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr6:15898000-15898400	Enhancers	K562	blood
34	chr6:15898000-15898800	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr6:15898000-15900600	Weak transcription	Fetal Intestine Large	intestine
36	chr6:15898000-15900800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:15898000-15900800	Weak transcription	Fetal Intestine Small	intestine
38	chr6:15898000-15901000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr6:15898000-15901000	Weak transcription	Liver	Liver
40	chr6:15898000-15901000	Weak transcription	Lung	lung
41	chr6:15898000-15901000	Weak transcription	NHEK	skin
42	chr6:15898000-15901200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:15898000-15901200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:15898000-15901200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr6:15898000-15901400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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