Variant report

Variant	rs6904123
Chromosome Location	chr6:15883196-15883197
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15879446..15881923-chr6:15881943..15885281,3	K562	blood:
2	chr6:15876199..15886926-chr6:16128027..16136085,15	K562	blood:
3	chr6:15882525..15884862-chr6:15922870..15925036,2	K562	blood:
4	chr6:15882852..15885272-chr6:16128267..16130804,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1074130	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1342742	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs220928	0.85[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs220929	0.82[ASN][1000 genomes]
rs220930	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4712262	0.85[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs4712265	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4716006	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61161120	0.89[EUR][1000 genomes]
rs61259710	0.89[EUR][1000 genomes]
rs6459415	0.87[JPT][hapmap]
rs6459419	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6459420	0.93[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs6459421	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6459429	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.89[EUR][1000 genomes]
rs6909164	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap]
rs6913590	0.81[JPT][hapmap]
rs6930691	0.81[EUR][1000 genomes]
rs6936104	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.89[EUR][1000 genomes]
rs707841	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs707842	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs742384	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs742385	0.86[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs7775142	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs808361	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs909845	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs926455	0.93[CHB][hapmap];0.94[JPT][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9370840	0.92[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9383088	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15870600-15884200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:15880600-15883200	Weak transcription	Left Ventricle	heart
3	chr6:15880600-15887600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:15880600-15887600	Weak transcription	Right Atrium	heart
5	chr6:15880800-15885600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr6:15880800-15885600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:15880800-15885800	Weak transcription	Psoas Muscle	Psoas
8	chr6:15881400-15883200	Weak transcription	Esophagus	oesophagus
9	chr6:15881800-15883800	Enhancers	Fetal Muscle Trunk	muscle
10	chr6:15881800-15883800	Enhancers	Fetal Muscle Leg	muscle
11	chr6:15882000-15885800	Weak transcription	Spleen	Spleen
12	chr6:15882000-15887200	Weak transcription	GM12878-XiMat	blood
13	chr6:15882000-15887400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:15882000-15887400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:15882000-15887400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:15882000-15887400	Weak transcription	K562	blood
17	chr6:15882200-15884400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr6:15882200-15887400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr6:15882200-15887400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:15882200-15887400	Weak transcription	Lung	lung
21	chr6:15882400-15885800	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr6:15882400-15886800	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr6:15882800-15883600	Enhancers	Adipose Nuclei	Adipose
24	chr6:15883000-15883400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr6:15883000-15883400	Enhancers	Placenta	Placenta
26	chr6:15883000-15883400	Enhancers	Fetal Stomach	stomach
27	chr6:15883000-15883600	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr6:15883000-15883600	Enhancers	Fetal Lung	lung
29	chr6:15883000-15883600	Enhancers	Ovary	ovary
30	chr6:15883000-15883800	Enhancers	HUVEC	blood vessel

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