Variant report

Variant	rs1342742
Chromosome Location	chr6:15905225-15905226
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15904540..15907068-chr6:16133158..16135126,2	K562	blood:
2	chr6:15904579..15906820-chr6:15998091..16001553,3	K562	blood:
3	chr6:15904972..15907971-chr6:15936573..15939321,3	K562	blood:
4	chr6:15904841..15911387-chr6:16127865..16132183,18	K562	blood:
5	chr6:15905196..15908263-chr6:15984889..15987796,3	K562	blood:
6	chr6:15904943..15906972-chr6:15916201..15918041,2	K562	blood:
7	chr6:15904710..15908298-chr6:16128127..16132826,9	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1074130	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs220928	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs4712262	0.93[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes]
rs4712265	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4716006	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61161120	1.00[EUR][1000 genomes]
rs61259710	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6459415	0.86[CHB][hapmap]
rs6459419	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6459420	1.00[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs6459421	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6459429	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6904123	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6909164	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6930691	0.90[EUR][1000 genomes]
rs6936104	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs707841	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs707842	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs742384	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs742385	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7775142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808361	1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs909845	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs926455	1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9370840	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15897800-15912200	Weak transcription	Right Atrium	heart
2	chr6:15900400-15908000	Enhancers	Primary B cells from peripheral blood	blood
3	chr6:15901600-15905400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:15901600-15906200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:15902000-15906200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:15902200-15905400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:15902200-15906200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:15902400-15905400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:15902400-15906200	Weak transcription	Spleen	Spleen
10	chr6:15902400-15906400	Weak transcription	Fetal Thymus	thymus
11	chr6:15902400-15907800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:15902400-15908400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr6:15902600-15905600	Weak transcription	Fetal Intestine Large	intestine
14	chr6:15902600-15907400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:15902800-15905400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:15902800-15905800	Enhancers	GM12878-XiMat	blood
17	chr6:15904200-15906400	Enhancers	Adipose Nuclei	Adipose
18	chr6:15904400-15905400	Enhancers	K562	blood
19	chr6:15904400-15907000	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr6:15904600-15907200	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr6:15904600-15908000	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr6:15904600-15908600	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr6:15904800-15911600	Enhancers	Placenta	Placenta
24	chr6:15904800-15913600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:15905000-15911000	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr6:15905200-15905800	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr6:15905200-15906800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:15905200-15906800	Enhancers	Primary B cells from cord blood	blood
29	chr6:15905200-15907000	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr6:15905200-15907000	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr6:15905200-15907000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr6:15905200-15907000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr6:15905200-15907400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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