Variant report

Variant	rs926455
Chromosome Location	chr6:15876962-15876963
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15876199..15886926-chr6:16128027..16136085,15	K562	blood:
2	chr6:15875079..15877964-chr6:15880093..15881980,2	K562	blood:
3	chr6:15876663..15879393-chr6:15883432..15885018,2	K562	blood:
4	chr6:15872117..15874631-chr6:15875616..15878274,2	K562	blood:
5	chr6:15874472..15877035-chr6:16127950..16130554,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1074130	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1342742	1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs220928	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs220929	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs220930	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4712262	0.93[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4712265	1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4716006	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61161120	1.00[EUR][1000 genomes]
rs61259710	1.00[EUR][1000 genomes]
rs6459415	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs6459419	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6459420	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6459421	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6459429	0.93[CHB][hapmap];0.81[JPT][hapmap];0.90[YRI][hapmap];1.00[EUR][1000 genomes]
rs6904123	0.93[CHB][hapmap];0.94[JPT][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6909164	1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs6930691	0.90[EUR][1000 genomes]
rs6936104	0.93[CHB][hapmap];0.81[JPT][hapmap];0.90[YRI][hapmap];1.00[EUR][1000 genomes]
rs707841	0.93[CHB][hapmap];0.81[JPT][hapmap];1.00[EUR][1000 genomes]
rs707842	0.93[CHB][hapmap];0.81[JPT][hapmap];1.00[EUR][1000 genomes]
rs742384	1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs742385	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs7775142	1.00[CHB][hapmap];0.81[JPT][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs808361	0.87[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs909845	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9370840	1.00[CHB][hapmap];0.81[JPT][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9383088	1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15870600-15884200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:15872200-15879400	Weak transcription	Fetal Intestine Small	intestine
3	chr6:15872600-15879200	Weak transcription	Adipose Nuclei	Adipose
4	chr6:15873600-15879000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:15873600-15879400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:15875000-15879400	Weak transcription	NHLF	lung
7	chr6:15875000-15880000	Weak transcription	Psoas Muscle	Psoas
8	chr6:15875400-15877200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:15875600-15882400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:15875800-15878600	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr6:15876400-15877200	Enhancers	NHDF-Ad	bronchial
12	chr6:15876400-15882200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr6:15876600-15877200	Enhancers	HUVEC	blood vessel
14	chr6:15876600-15879600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:15876600-15882000	Enhancers	Primary hematopoietic stem cells	blood
16	chr6:15876600-15882200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:15876800-15877200	Enhancers	GM12878-XiMat	blood
18	chr6:15876800-15879000	Weak transcription	Primary B cells from peripheral blood	blood
19	chr6:15876800-15879800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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