Variant report

Variant	rs6459421
Chromosome Location	chr6:15887076-15887077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15877292..15880504-chr6:15885962..15890357,4	K562	blood:
2	chr6:15867696..15869985-chr6:15886465..15888191,2	K562	blood:
3	chr6:15868485..15870238-chr6:15886465..15888111,2	K562	blood:
4	chr6:15880603..15882867-chr6:15885643..15887252,2	K562	blood:
5	chr6:15877602..15881521-chr6:15885962..15888404,4	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1074130	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1342742	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs220928	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap]
rs4712262	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[EUR][1000 genomes]
rs4712265	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4716006	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61161120	1.00[EUR][1000 genomes]
rs61259710	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6459415	0.86[CHB][hapmap];0.80[JPT][hapmap]
rs6459419	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6459420	1.00[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs6459429	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6904123	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6909164	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs6930691	0.90[EUR][1000 genomes]
rs6936104	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs707841	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs707842	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs742384	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs742385	0.93[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs7775142	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs808361	1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs909845	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs926455	1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9370840	1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9383088	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15880600-15887600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:15880600-15887600	Weak transcription	Right Atrium	heart
3	chr6:15882000-15887200	Weak transcription	GM12878-XiMat	blood
4	chr6:15882000-15887400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:15882000-15887400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:15882000-15887400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:15882000-15887400	Weak transcription	K562	blood
8	chr6:15882200-15887400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:15882200-15887400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:15882200-15887400	Weak transcription	Lung	lung
11	chr6:15883400-15895800	Weak transcription	Esophagus	oesophagus
12	chr6:15883600-15887400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:15883600-15887600	Weak transcription	Adipose Nuclei	Adipose
14	chr6:15883800-15887600	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:15885800-15891000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr6:15886000-15887600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr6:15886200-15887600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr6:15886400-15887400	Weak transcription	Spleen	Spleen
19	chr6:15886800-15887800	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr6:15887000-15889800	Enhancers	Primary B cells from peripheral blood	blood

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