Variant report

Variant	rs9383088
Chromosome Location	chr6:15911761-15911762
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15910080..15912614-chr6:15921343..15923025,2	K562	blood:
2	chr6:15910408..15912047-chr6:16128033..16131218,3	K562	blood:
3	chr6:15909152..15912123-chr6:15916464..15918319,2	MCF-7	breast:
4	chr6:15909137..15912614-chr6:15921343..15924377,3	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1074130	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1342742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs220928	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs4712262	0.93[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes]
rs4712265	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4716006	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61161120	1.00[EUR][1000 genomes]
rs61259710	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6459415	0.86[CHB][hapmap]
rs6459419	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6459420	1.00[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs6459421	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6459429	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6904123	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6909164	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6930691	0.90[EUR][1000 genomes]
rs6936104	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs707841	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs707842	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs742384	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs742385	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7775142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs808361	1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs909845	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs926455	1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9370840	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15897800-15912200	Weak transcription	Right Atrium	heart
2	chr6:15904800-15913600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:15906400-15912000	Weak transcription	Adipose Nuclei	Adipose
4	chr6:15906600-15912200	Weak transcription	Spleen	Spleen
5	chr6:15906800-15912200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:15907000-15912000	Weak transcription	Fetal Kidney	kidney
7	chr6:15907000-15912200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:15907000-15912200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:15908000-15912800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:15908200-15912600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:15908400-15912400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr6:15908600-15912400	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr6:15909400-15912400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr6:15910400-15912200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:15910600-15911800	Weak transcription	K562	blood
16	chr6:15910600-15912000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr6:15910800-15911800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr6:15910800-15911800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr6:15910800-15911800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr6:15911000-15912400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:15911400-15912200	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr6:15911400-15912400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr6:15911400-15912400	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr6:15911400-15913600	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr6:15911400-15914000	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr6:15911600-15912000	Weak transcription	Placenta	Placenta

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