Variant report

Variant	rs28454020
Chromosome Location	chr6:15882683-15882684
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15879446..15881923-chr6:15881943..15885281,3	K562	blood:
2	chr6:15876199..15886926-chr6:16128027..16136085,15	K562	blood:
3	chr6:15882525..15884862-chr6:15922870..15925036,2	K562	blood:
4	chr6:15880603..15882867-chr6:15885643..15887252,2	K562	blood:
5	chr6:15880769..15883178-chr6:16128154..16130774,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10085230	0.93[EUR][1000 genomes]
rs10085361	0.93[EUR][1000 genomes]
rs1040469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11751544	0.93[EUR][1000 genomes]
rs11754210	0.89[EUR][1000 genomes]
rs11755611	0.92[EUR][1000 genomes]
rs11756689	0.90[EUR][1000 genomes]
rs11756991	0.89[EUR][1000 genomes]
rs11757470	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11758001	0.92[EUR][1000 genomes]
rs16877310	0.89[EUR][1000 genomes]
rs16877316	0.89[EUR][1000 genomes]
rs16877348	0.89[EUR][1000 genomes]
rs2096212	0.80[EUR][1000 genomes]
rs4365933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4551166	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56306564	0.89[EUR][1000 genomes]
rs57309153	0.89[EUR][1000 genomes]
rs57383866	0.89[EUR][1000 genomes]
rs57780024	0.83[EUR][1000 genomes]
rs57857965	0.83[EUR][1000 genomes]
rs58035103	0.89[EUR][1000 genomes]
rs58279883	0.83[EUR][1000 genomes]
rs58436507	0.90[EUR][1000 genomes]
rs58645956	0.81[EUR][1000 genomes]
rs58910903	0.87[EUR][1000 genomes]
rs59037030	0.90[EUR][1000 genomes]
rs61684483	0.87[EUR][1000 genomes]
rs66519836	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs66835686	0.89[EUR][1000 genomes]
rs67947458	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72823491	0.85[EUR][1000 genomes]
rs72823498	0.85[EUR][1000 genomes]
rs72825609	0.85[EUR][1000 genomes]
rs72825626	0.93[EUR][1000 genomes]
rs72825628	0.93[EUR][1000 genomes]
rs72825649	0.87[EUR][1000 genomes]
rs72825654	0.89[EUR][1000 genomes]
rs72825657	0.89[EUR][1000 genomes]
rs72825659	0.89[EUR][1000 genomes]
rs72825660	0.89[EUR][1000 genomes]
rs72825662	0.90[EUR][1000 genomes]
rs72825664	0.89[EUR][1000 genomes]
rs72825669	0.82[EUR][1000 genomes]
rs72825676	0.82[EUR][1000 genomes]
rs729821	0.85[EUR][1000 genomes]
rs733409	0.85[EUR][1000 genomes]
rs73368559	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs760957	0.93[EUR][1000 genomes]
rs808363	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs808365	0.83[EUR][1000 genomes]
rs9383092	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9464841	0.93[EUR][1000 genomes]
rs9476971	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9476972	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9476973	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9476976	0.93[EUR][1000 genomes]
rs9476977	0.93[EUR][1000 genomes]
rs9476980	0.90[EUR][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15870600-15884200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:15880600-15883000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:15880600-15883000	Weak transcription	Ovary	ovary
4	chr6:15880600-15883200	Weak transcription	Left Ventricle	heart
5	chr6:15880600-15887600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:15880600-15887600	Weak transcription	Right Atrium	heart
7	chr6:15880800-15883000	Weak transcription	Fetal Lung	lung
8	chr6:15880800-15883000	Weak transcription	Fetal Stomach	stomach
9	chr6:15880800-15885600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr6:15880800-15885600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr6:15880800-15885800	Weak transcription	Psoas Muscle	Psoas
12	chr6:15881000-15883000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:15881400-15883200	Weak transcription	Esophagus	oesophagus
14	chr6:15881800-15883800	Enhancers	Fetal Muscle Trunk	muscle
15	chr6:15881800-15883800	Enhancers	Fetal Muscle Leg	muscle
16	chr6:15882000-15883000	Weak transcription	Placenta	Placenta
17	chr6:15882000-15883000	Weak transcription	HUVEC	blood vessel
18	chr6:15882000-15885800	Weak transcription	Spleen	Spleen
19	chr6:15882000-15887200	Weak transcription	GM12878-XiMat	blood
20	chr6:15882000-15887400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr6:15882000-15887400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:15882000-15887400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:15882000-15887400	Weak transcription	K562	blood
24	chr6:15882200-15884400	Weak transcription	Primary B cells from peripheral blood	blood
25	chr6:15882200-15887400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr6:15882200-15887400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:15882200-15887400	Weak transcription	Lung	lung
28	chr6:15882400-15882800	Weak transcription	Adipose Nuclei	Adipose
29	chr6:15882400-15885800	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr6:15882400-15886800	Weak transcription	Monocytes-CD14+_RO01746	blood

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