Variant report

Variant	rs10085230
Chromosome Location	chr6:15892541-15892542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15892259..15903343-chr6:16127919..16134608,26	K562	blood:
2	chr6:15892464..15894325-chr6:16128031..16129867,2	MCF-7	breast:
3	chr6:15696754..15698975-chr6:15892314..15894571,2	K562	blood:
4	chr6:15892105..15894274-chr6:15895496..15897535,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10085361	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1040469	0.97[EUR][1000 genomes]
rs11751544	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11754210	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11755611	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11756689	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11756991	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11757470	0.86[EUR][1000 genomes]
rs11758001	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16877310	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16877316	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16877348	0.95[EUR][1000 genomes]
rs2096212	0.86[EUR][1000 genomes]
rs28454020	0.93[EUR][1000 genomes]
rs4365933	0.97[EUR][1000 genomes]
rs4551166	0.97[EUR][1000 genomes]
rs56306564	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57309153	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57383866	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57780024	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57857965	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58035103	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58279883	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58436507	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58645956	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58910903	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59037030	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61684483	0.94[EUR][1000 genomes]
rs66519836	1.00[EUR][1000 genomes]
rs66835686	0.95[EUR][1000 genomes]
rs67947458	0.93[EUR][1000 genomes]
rs72823484	0.81[AMR][1000 genomes]
rs72823498	0.81[AMR][1000 genomes]
rs72825609	0.81[AMR][1000 genomes]
rs72825626	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825628	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825649	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72825654	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825657	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825659	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825660	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825662	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72825664	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825669	0.88[EUR][1000 genomes]
rs72825676	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs729821	0.81[AMR][1000 genomes]
rs733409	0.81[AMR][1000 genomes]
rs73368559	0.93[EUR][1000 genomes]
rs760957	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs808363	0.97[EUR][1000 genomes]
rs808365	0.89[EUR][1000 genomes]
rs9383092	0.93[EUR][1000 genomes]
rs9464841	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476971	1.00[EUR][1000 genomes]
rs9476972	1.00[EUR][1000 genomes]
rs9476973	1.00[EUR][1000 genomes]
rs9476976	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476977	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476980	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15883400-15895800	Weak transcription	Esophagus	oesophagus
2	chr6:15889600-15897200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:15889600-15897400	Weak transcription	Spleen	Spleen
4	chr6:15889800-15895800	Weak transcription	Fetal Lung	lung
5	chr6:15890200-15892600	Weak transcription	Adipose Nuclei	Adipose
6	chr6:15890200-15897200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:15892000-15893400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr6:15892000-15893600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr6:15892400-15893000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr6:15892400-15893000	Enhancers	Right Atrium	heart

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