Variant report

Variant	rs57309153
Chromosome Location	chr6:15931770-15931771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15930578..15932572-chr6:16129445..16130955,2	K562	blood:
2	chr6:15930578..15933291-chr6:16126931..16132452,5	K562	blood:
3	chr6:15920045..15922599-chr6:15930327..15932865,2	K562	blood:
4	chr6:15768943..15771188-chr6:15931054..15932857,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10085230	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10085361	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1040469	0.92[EUR][1000 genomes]
rs11751544	0.95[EUR][1000 genomes]
rs11754210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11755611	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11755677	0.82[EUR][1000 genomes]
rs11755935	0.81[EUR][1000 genomes]
rs11756689	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11756991	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11757470	0.82[EUR][1000 genomes]
rs11758001	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16877310	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16877316	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16877348	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2096212	0.91[EUR][1000 genomes]
rs28454020	0.89[EUR][1000 genomes]
rs4365933	0.92[EUR][1000 genomes]
rs4551166	0.92[EUR][1000 genomes]
rs56306564	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57383866	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57780024	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57857965	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58035103	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58279883	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58436507	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58645956	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58910903	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59037030	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61684483	0.95[EUR][1000 genomes]
rs66519836	0.95[EUR][1000 genomes]
rs66835686	1.00[EUR][1000 genomes]
rs67947458	0.89[EUR][1000 genomes]
rs72823484	0.85[AMR][1000 genomes]
rs72823498	0.85[AMR][1000 genomes]
rs72825609	0.85[AMR][1000 genomes]
rs72825626	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825628	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825649	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825654	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825657	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825659	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825660	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825662	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72825664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825669	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72825676	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72825695	0.82[EUR][1000 genomes]
rs72825697	0.82[EUR][1000 genomes]
rs72829622	0.82[EUR][1000 genomes]
rs729821	0.85[AMR][1000 genomes]
rs733409	0.85[AMR][1000 genomes]
rs73368559	0.89[EUR][1000 genomes]
rs760957	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs808363	0.98[EUR][1000 genomes]
rs808365	0.94[EUR][1000 genomes]
rs9383092	0.95[EUR][1000 genomes]
rs9464841	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9476971	0.95[EUR][1000 genomes]
rs9476972	0.95[EUR][1000 genomes]
rs9476973	0.95[EUR][1000 genomes]
rs9476976	0.95[EUR][1000 genomes]
rs9476977	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9476980	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15928000-15936400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:15930800-15931800	ZNF genes & repeats	Placenta	Placenta
3	chr6:15931600-15932000	Weak transcription	Left Ventricle	heart
4	chr6:15931600-15933200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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