Variant report

Variant	rs10949323
Chromosome Location	chr6:15954509-15954510
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15953240..15956726-chr6:16129435..16131819,3	K562	blood:
2	chr6:15935209..15937879-chr6:15952425..15954848,2	K562	blood:
3	chr6:15950314..15954724-chr6:15994866..15997380,4	K562	blood:
4	chr6:15947406..15949542-chr6:15954395..15956936,3	K562	blood:
5	chr6:15923596..15926466-chr6:15952289..15954964,2	K562	blood:

Variant related genes	Relation type
ENSG00000232947	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17770107	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4716020	0.85[CHB][hapmap]
rs72653739	0.92[EUR][1000 genomes]
rs9370849	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9370852	0.92[EUR][1000 genomes]
rs9383094	1.00[CEU][hapmap]
rs9383096	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9383097	0.83[ASN][1000 genomes]
rs9396621	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9396622	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9396623	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15949800-15956600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:15949800-15956600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:15950400-15956000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:15950800-15955800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:15950800-15955800	Weak transcription	Fetal Intestine Large	intestine
6	chr6:15950800-15956600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:15951000-15961600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:15951200-15955000	Enhancers	GM12878-XiMat	blood
9	chr6:15951600-15957800	Weak transcription	Gastric	stomach
10	chr6:15952000-15954800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:15952400-15954800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:15953200-15956600	Weak transcription	Pancreas	Pancrea
13	chr6:15953400-15955600	Weak transcription	K562	blood
14	chr6:15953600-15956600	Weak transcription	Lung	lung
15	chr6:15953800-15955600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:15953800-15955600	Weak transcription	Fetal Intestine Small	intestine
17	chr6:15953800-15956000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr6:15953800-15956400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:15954000-15954800	Enhancers	Fetal Heart	heart
20	chr6:15954000-15956000	Weak transcription	Fetal Lung	lung
21	chr6:15954000-15956400	Weak transcription	Adipose Nuclei	Adipose
22	chr6:15954000-15956400	Weak transcription	Liver	Liver
23	chr6:15954000-15956400	Weak transcription	Fetal Kidney	kidney
24	chr6:15954000-15956600	Weak transcription	Fetal Muscle Leg	muscle
25	chr6:15954000-15961400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr6:15954000-15961400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr6:15954000-15961600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:15954200-15956000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr6:15954200-15956000	Weak transcription	Right Atrium	heart
30	chr6:15954200-15956400	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr6:15954200-15956400	Weak transcription	Fetal Stomach	stomach
32	chr6:15954200-15961400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr6:15954200-15961600	Weak transcription	Left Ventricle	heart
34	chr6:15954400-15954800	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr6:15954400-15956000	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr6:15954400-15956200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr6:15954400-15956400	Weak transcription	HUVEC	blood vessel
38	chr6:15954400-15956600	Weak transcription	Placenta	Placenta
39	chr6:15954400-15956800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links