Variant report

Variant	rs9396621
Chromosome Location	chr6:15963733-15963734
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10949323	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17770107	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67091502	0.82[ASN][1000 genomes]
rs72653739	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9349991	0.89[ASN][1000 genomes]
rs9370849	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9370851	0.89[ASN][1000 genomes]
rs9370852	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9383096	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383097	0.94[ASN][1000 genomes]
rs9396622	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396623	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15960600-15964000	Enhancers	GM12878-XiMat	blood
2	chr6:15961400-15964000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:15961400-15964000	Enhancers	HUVEC	blood vessel
4	chr6:15961600-15963800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:15961600-15964600	Weak transcription	K562	blood
6	chr6:15962600-15965400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:15963000-15966200	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:15963200-15966000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:15963200-15969000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:15963200-15969000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:15963600-15968400	Weak transcription	HMEC	breast
12	chr6:15963600-15969000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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