Variant report

Variant	rs9370849
Chromosome Location	chr6:15961665-15961666
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15883964..15886917-chr6:15959495..15962410,2	K562	blood:
2	chr6:15961633..15964973-chr6:16129383..16131878,3	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10949323	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17770107	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4716020	0.90[CHB][hapmap]
rs67091502	0.81[ASN][1000 genomes]
rs6940301	0.85[CHB][hapmap]
rs72653739	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9349991	0.88[ASN][1000 genomes]
rs9367887	0.85[CHB][hapmap]
rs9370851	0.88[ASN][1000 genomes]
rs9370852	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9370853	0.85[CHB][hapmap]
rs9383094	1.00[CEU][hapmap]
rs9383096	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9383097	0.94[ASN][1000 genomes]
rs9396621	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9396622	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9396623	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15957000-15962200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:15957000-15962400	Weak transcription	NHLF	lung
3	chr6:15960200-15961800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
4	chr6:15960600-15964000	Enhancers	GM12878-XiMat	blood
5	chr6:15961400-15961800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:15961400-15961800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:15961400-15961800	ZNF genes & repeats	Aorta	Aorta
8	chr6:15961400-15961800	ZNF genes & repeats	Lung	lung
9	chr6:15961400-15961800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr6:15961400-15962200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr6:15961400-15962200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr6:15961400-15962200	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr6:15961400-15962600	Enhancers	Spleen	Spleen
14	chr6:15961400-15963000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr6:15961400-15963200	Enhancers	H9 Cell Line	embryonic stem cell
16	chr6:15961400-15963200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr6:15961400-15963200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr6:15961400-15963200	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr6:15961400-15963600	Enhancers	HMEC	breast
20	chr6:15961400-15964000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:15961400-15964000	Enhancers	HUVEC	blood vessel
22	chr6:15961600-15961800	Enhancers	Left Ventricle	heart
23	chr6:15961600-15962000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:15961600-15962200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:15961600-15962800	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr6:15961600-15963200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:15961600-15963400	Enhancers	Primary hematopoietic stem cells	blood
28	chr6:15961600-15963600	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr6:15961600-15963600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:15961600-15963600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:15961600-15963600	Enhancers	NHEK	skin
32	chr6:15961600-15963800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:15961600-15964600	Weak transcription	K562	blood

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