Variant report

Variant	rs17770107
Chromosome Location	chr6:15961222-15961223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10949323	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[GIH][hapmap];0.88[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4716020	0.90[CHB][hapmap]
rs67091502	0.81[ASN][1000 genomes]
rs6940301	0.85[CHB][hapmap]
rs72653739	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9349991	0.88[ASN][1000 genomes]
rs9367887	0.85[CHB][hapmap]
rs9370849	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370851	0.88[ASN][1000 genomes]
rs9370852	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9370853	0.85[CHB][hapmap];0.83[GIH][hapmap]
rs9383094	1.00[CEU][hapmap]
rs9383096	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9383097	0.94[ASN][1000 genomes]
rs9396621	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9396622	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9396623	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15951000-15961600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:15954000-15961400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:15954000-15961400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:15954000-15961600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:15954200-15961400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:15954200-15961600	Weak transcription	Left Ventricle	heart
7	chr6:15957000-15962200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:15957000-15962400	Weak transcription	NHLF	lung
9	chr6:15957200-15961400	Weak transcription	Spleen	Spleen
10	chr6:15957800-15961400	Weak transcription	HUVEC	blood vessel
11	chr6:15958000-15961400	Weak transcription	Lung	lung
12	chr6:15959000-15961400	Weak transcription	Aorta	Aorta
13	chr6:15960200-15961800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
14	chr6:15960600-15961600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:15960600-15964000	Enhancers	GM12878-XiMat	blood
16	chr6:15960800-15961600	ZNF genes & repeats	K562	blood
17	chr6:15961000-15961400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:15961200-15961400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr6:15961200-15961400	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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