Variant report

Variant	rs6940979
Chromosome Location	chr6:147149250-147149251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2328770	0.86[YRI][hapmap]
rs6570778	0.88[YRI][hapmap]
rs6915391	0.94[YRI][hapmap]
rs6929209	0.88[YRI][hapmap]
rs73789013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7757369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7760389	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9399587	0.86[YRI][hapmap]
rs9485127	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497645	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs9497648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497662	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147141000-147154400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:147142200-147154200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:147148400-147149400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:147148400-147150000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr6:147148600-147151200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr6:147148800-147149400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:147148800-147150200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr6:147148800-147150200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr6:147148800-147150200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr6:147149000-147149800	Weak transcription	K562	blood
11	chr6:147149000-147153200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr6:147149200-147149800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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