Variant report

Variant	rs7760389
Chromosome Location	chr6:147141245-147141246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs6940979	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73789013	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7757369	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9485127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497642	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497645	0.93[AFR][1000 genomes]
rs9497648	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497662	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147137800-147141400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:147140400-147141600	Enhancers	Osteobl	bone
3	chr6:147140600-147141600	Enhancers	K562	blood
4	chr6:147140600-147141600	Enhancers	NH-A	brain
5	chr6:147140600-147141800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:147141000-147154400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:147141200-147142000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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