Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147139442..147141026-chr6:147141796..147143486,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11964579	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966058	0.83[ASN][1000 genomes]
rs17076418	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[ASN][1000 genomes]
rs17076421	1.00[CHB][hapmap]
rs2328768	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs2328770	0.86[YRI][hapmap]
rs60743508	0.83[ASN][1000 genomes]
rs61615562	0.83[ASN][1000 genomes]
rs6570778	0.86[YRI][hapmap]
rs6915391	0.93[YRI][hapmap]
rs6929209	0.86[YRI][hapmap]
rs6940979	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73789013	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7757369	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7760389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7767826	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9399587	0.86[YRI][hapmap]
rs9485125	1.00[ASN][1000 genomes]
rs9485126	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9485128	1.00[EUR][1000 genomes]
rs9497638	1.00[ASN][1000 genomes]
rs9497642	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497645	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs9497648	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497662	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv966634	chr6:147128760-147141217	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3376466	chr6:147134213-147140733	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147134200-147140600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:147134200-147140600	Weak transcription	K562	blood
3	chr6:147136000-147141200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:147136200-147140600	Weak transcription	NH-A	brain
5	chr6:147137800-147141400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:147140400-147141600	Enhancers	Osteobl	bone

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