Variant report
| Variant | rs11964579 |
|---|---|
| Chromosome Location | chr6:147126748-147126749 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11966058 | 0.83[ASN][1000 genomes] |
| rs11966293 | 1.00[AMR][1000 genomes] |
| rs17076403 | 1.00[AMR][1000 genomes] |
| rs17076418 | 1.00[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs17076421 | 1.00[CHB][hapmap] |
| rs17833481 | 1.00[AMR][1000 genomes] |
| rs2328768 | 1.00[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs28722930 | 1.00[AMR][1000 genomes] |
| rs60743508 | 0.83[ASN][1000 genomes] |
| rs61615562 | 0.83[ASN][1000 genomes] |
| rs6899896 | 1.00[AMR][1000 genomes] |
| rs6926607 | 1.00[AMR][1000 genomes] |
| rs7738837 | 1.00[AMR][1000 genomes] |
| rs7745833 | 1.00[AMR][1000 genomes] |
| rs7746479 | 1.00[AMR][1000 genomes] |
| rs7749205 | 1.00[AMR][1000 genomes] |
| rs7759494 | 1.00[AMR][1000 genomes] |
| rs7759615 | 1.00[AMR][1000 genomes] |
| rs7763638 | 1.00[AMR][1000 genomes] |
| rs7767826 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7771966 | 1.00[AMR][1000 genomes] |
| rs9485125 | 1.00[ASN][1000 genomes] |
| rs9485126 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9485127 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9485128 | 1.00[EUR][1000 genomes] |
| rs9497638 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830838 | chr6:147090745-147274669 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:147125400-147133600 | Weak transcription | K562 | blood |
