Variant report

Variant	rs17076403
Chromosome Location	chr6:147195979-147195980
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11964579	1.00[AMR][1000 genomes]
rs11966293	1.00[AMR][1000 genomes]
rs17833481	1.00[AMR][1000 genomes]
rs28722930	1.00[AMR][1000 genomes]
rs6899896	1.00[AMR][1000 genomes]
rs6926607	1.00[AMR][1000 genomes]
rs7738837	1.00[AMR][1000 genomes]
rs7745833	1.00[AMR][1000 genomes]
rs7746479	1.00[AMR][1000 genomes]
rs7749205	1.00[AMR][1000 genomes]
rs7756969	0.81[AFR][1000 genomes]
rs7759494	1.00[AMR][1000 genomes]
rs7759615	1.00[AMR][1000 genomes]
rs7763638	1.00[AMR][1000 genomes]
rs7771966	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147182200-147197600	Weak transcription	Pancreas	Pancrea
2	chr6:147189800-147196400	Enhancers	K562	blood
3	chr6:147192400-147196600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr6:147192400-147197000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr6:147192400-147197400	Weak transcription	Primary B cells from peripheral blood	blood
6	chr6:147192600-147196000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr6:147192600-147196800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:147193000-147200800	Weak transcription	Esophagus	oesophagus
9	chr6:147193400-147198600	Weak transcription	Liver	Liver
10	chr6:147193600-147197600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:147193600-147199600	Weak transcription	NHDF-Ad	bronchial
12	chr6:147194000-147197000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr6:147195600-147197400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:147195800-147196000	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr6:147195800-147196000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links