Variant report

Variant	rs6899896
Chromosome Location	chr6:147174475-147174476
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11964579	1.00[AMR][1000 genomes]
rs11966293	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17076403	1.00[AMR][1000 genomes]
rs17833481	1.00[AMR][1000 genomes]
rs28722930	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6926607	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7738837	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7745833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7746479	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7749205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7759494	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7759615	1.00[AMR][1000 genomes]
rs7763638	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7771966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147163200-147178800	Weak transcription	Right Atrium	heart
2	chr6:147163400-147178800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:147172000-147178400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:147172200-147178800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:147172400-147176800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:147172800-147178800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:147173200-147175600	Weak transcription	K562	blood
8	chr6:147173400-147175600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:147173600-147176400	Weak transcription	NHDF-Ad	bronchial
10	chr6:147173600-147178800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:147173800-147178600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:147173800-147178600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:147173800-147178600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:147173800-147178800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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