Variant report

Variant	rs7746479
Chromosome Location	chr6:147133412-147133413
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11964579	1.00[AMR][1000 genomes]
rs11966293	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17076403	1.00[AMR][1000 genomes]
rs17833481	1.00[AMR][1000 genomes]
rs28722930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6899896	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6926607	1.00[AMR][1000 genomes]
rs7738837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7745833	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7749205	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7759494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7759615	1.00[AMR][1000 genomes]
rs7763638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7771966	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv966634	chr6:147128760-147141217	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2518343	chr6:147129690-147138004	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3526991	chr6:147130896-147137152	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3526992	chr6:147130896-147137152	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3475079	chr6:147130951-147138090	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3475080	chr6:147130951-147138090	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3329784	chr6:147131018-147137998	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3326141	chr6:147131185-147138244	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147125400-147133600	Weak transcription	K562	blood
2	chr6:147129600-147136800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:147130800-147137400	Weak transcription	Placenta	Placenta
4	chr6:147133200-147136200	Enhancers	NH-A	brain
5	chr6:147133400-147136000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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