Variant report

Variant	rs7745833
Chromosome Location	chr6:147154134-147154135
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11964579	1.00[AMR][1000 genomes]
rs11966293	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17076403	1.00[AMR][1000 genomes]
rs17833481	1.00[AMR][1000 genomes]
rs28722930	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6899896	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6926607	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7738837	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7746479	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7749205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7759494	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7759615	1.00[AMR][1000 genomes]
rs7763638	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7771966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147141000-147154400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:147142200-147154200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:147150200-147162200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:147151600-147154400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr6:147151800-147154200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:147152400-147154400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:147153000-147154400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:147153200-147154400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:147153200-147154600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:147153200-147154800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr6:147153800-147154600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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