Variant report

Variant	rs9485126
Chromosome Location	chr6:147140223-147140224
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11964579	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966058	0.83[ASN][1000 genomes]
rs17076418	0.83[ASN][1000 genomes]
rs2328768	0.83[ASN][1000 genomes]
rs60743508	0.83[ASN][1000 genomes]
rs61615562	0.83[ASN][1000 genomes]
rs7767826	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9485125	1.00[ASN][1000 genomes]
rs9485127	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9485128	1.00[EUR][1000 genomes]
rs9497638	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv966634	chr6:147128760-147141217	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3376466	chr6:147134213-147140733	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147134200-147140600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:147134200-147140600	Weak transcription	K562	blood
3	chr6:147136000-147141200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:147136200-147140400	Weak transcription	Osteobl	bone
5	chr6:147136200-147140600	Weak transcription	NH-A	brain
6	chr6:147137800-147141400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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