Variant report

Variant	rs6941932
Chromosome Location	chr6:145197337-145197338
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12111267	1.00[AMR][1000 genomes]
rs28599831	1.00[AMR][1000 genomes]
rs6925418	1.00[AMR][1000 genomes]
rs6927968	1.00[AMR][1000 genomes]
rs6930763	1.00[AMR][1000 genomes]
rs6933210	1.00[AMR][1000 genomes]
rs6939199	1.00[AMR][1000 genomes]
rs7759926	1.00[AMR][1000 genomes]
rs7765793	1.00[AMR][1000 genomes]
rs7771184	1.00[AMR][1000 genomes]
rs9484903	1.00[AMR][1000 genomes]
rs9484906	1.00[AMR][1000 genomes]
rs9484907	1.00[AMR][1000 genomes]
rs9484910	1.00[AMR][1000 genomes]
rs9484911	1.00[AMR][1000 genomes]
rs9497062	1.00[AMR][1000 genomes]
rs9497067	1.00[AMR][1000 genomes]
rs9497071	1.00[AMR][1000 genomes]
rs9497072	1.00[AMR][1000 genomes]
rs9497073	1.00[AMR][1000 genomes]
rs9497074	1.00[AMR][1000 genomes]
rs9497075	1.00[AMR][1000 genomes]
rs9497076	1.00[AMR][1000 genomes]
rs9497077	1.00[AMR][1000 genomes]
rs9497078	1.00[AMR][1000 genomes]
rs9497079	1.00[AMR][1000 genomes]
rs9497080	1.00[AMR][1000 genomes]
rs9497082	1.00[AMR][1000 genomes]
rs9497083	1.00[AMR][1000 genomes]
rs9497084	1.00[AMR][1000 genomes]
rs9497085	1.00[AMR][1000 genomes]
rs9497086	1.00[AMR][1000 genomes]
rs9497098	1.00[AMR][1000 genomes]
rs9497099	1.00[AMR][1000 genomes]
rs9497129	1.00[AMR][1000 genomes]
rs9767429	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv886740	chr6:145105354-145199259	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv464070	chr6:145184504-145214952	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv604823	chr6:145184504-145214952	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv432966	chr6:145191307-145201307	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145194200-145198400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:145196200-145199600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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