Variant report

Variant	rs9497129
Chromosome Location	chr6:145237673-145237674
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12111267	1.00[AMR][1000 genomes]
rs28599831	1.00[AMR][1000 genomes]
rs6925418	1.00[AMR][1000 genomes]
rs6927968	1.00[AMR][1000 genomes]
rs6933210	1.00[AMR][1000 genomes]
rs6939199	1.00[AMR][1000 genomes]
rs6941932	1.00[AMR][1000 genomes]
rs7759926	1.00[AMR][1000 genomes]
rs7765793	1.00[AMR][1000 genomes]
rs9484903	1.00[AMR][1000 genomes]
rs9484906	1.00[AMR][1000 genomes]
rs9484907	1.00[AMR][1000 genomes]
rs9484910	1.00[AMR][1000 genomes]
rs9484911	1.00[AMR][1000 genomes]
rs9497062	1.00[AMR][1000 genomes]
rs9497067	1.00[AMR][1000 genomes]
rs9497071	1.00[AMR][1000 genomes]
rs9497072	1.00[AMR][1000 genomes]
rs9497073	1.00[AMR][1000 genomes]
rs9497074	1.00[AMR][1000 genomes]
rs9497075	1.00[AMR][1000 genomes]
rs9497076	1.00[AMR][1000 genomes]
rs9497077	1.00[AMR][1000 genomes]
rs9497078	1.00[AMR][1000 genomes]
rs9497079	1.00[AMR][1000 genomes]
rs9497080	1.00[AMR][1000 genomes]
rs9497082	1.00[AMR][1000 genomes]
rs9497083	1.00[AMR][1000 genomes]
rs9497084	1.00[AMR][1000 genomes]
rs9497085	1.00[AMR][1000 genomes]
rs9497086	1.00[AMR][1000 genomes]
rs9497098	1.00[AMR][1000 genomes]
rs9497099	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145234400-145243400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:145234800-145242000	Weak transcription	HSMMtube	muscle
3	chr6:145235600-145241600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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