Variant report

Variant	rs9484911
Chromosome Location	chr6:145182613-145182614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12111267	0.89[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28599831	1.00[AMR][1000 genomes]
rs4526210	0.90[AFR][1000 genomes]
rs6925418	1.00[AMR][1000 genomes]
rs6927968	1.00[AMR][1000 genomes]
rs6930763	1.00[AMR][1000 genomes]
rs6933210	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6939199	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6941932	1.00[AMR][1000 genomes]
rs7759926	1.00[AMR][1000 genomes]
rs7765793	1.00[AMR][1000 genomes]
rs7771184	1.00[AMR][1000 genomes]
rs9390234	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs9484903	1.00[AMR][1000 genomes]
rs9484906	1.00[AMR][1000 genomes]
rs9484907	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484910	1.00[AMR][1000 genomes]
rs9497062	1.00[AMR][1000 genomes]
rs9497067	1.00[AMR][1000 genomes]
rs9497071	1.00[AMR][1000 genomes]
rs9497072	1.00[AMR][1000 genomes]
rs9497073	1.00[AMR][1000 genomes]
rs9497074	1.00[AMR][1000 genomes]
rs9497075	1.00[AMR][1000 genomes]
rs9497076	1.00[AMR][1000 genomes]
rs9497077	1.00[AMR][1000 genomes]
rs9497078	1.00[AMR][1000 genomes]
rs9497079	1.00[AMR][1000 genomes]
rs9497080	1.00[AMR][1000 genomes]
rs9497082	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497083	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497084	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497085	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497086	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497098	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497099	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497129	1.00[AMR][1000 genomes]
rs9767429	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv886740	chr6:145105354-145199259	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145167400-145188000	Weak transcription	NHDF-Ad	bronchial
2	chr6:145169400-145189400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:145177400-145192200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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