Variant report

Variant	rs6944852
Chromosome Location	chr7:16067543-16067544
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10435062	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10487901	0.87[ASN][1000 genomes]
rs10950596	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10950597	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11761043	0.92[ASN][1000 genomes]
rs12666927	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13247199	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1406102	0.90[ASN][1000 genomes]
rs1528146	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17354756	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2030972	0.80[EUR][1000 genomes]
rs2389574	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35006616	0.92[EUR][1000 genomes]
rs4721468	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4721470	0.85[ASN][1000 genomes]
rs6461215	0.91[ASN][1000 genomes]
rs6966682	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs758704	1.00[ASN][1000 genomes]
rs7787774	0.90[ASN][1000 genomes]
rs7789550	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs887460	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv517991	chr7:16042596-16104327	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1030165	chr7:16043678-16085488	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv518740	chr7:16045794-16085019	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv527277	chr7:16045794-16085019	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv606311	chr7:16045794-16085019	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16061200-16068800	Enhancers	Rectal Smooth Muscle	rectum
2	chr7:16064200-16068600	Enhancers	Colon Smooth Muscle	Colon
3	chr7:16064600-16069000	Enhancers	HSMMtube	muscle
4	chr7:16064600-16069200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:16065000-16067600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:16065000-16068600	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr7:16065200-16068400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr7:16065200-16068800	Enhancers	Osteobl	bone
9	chr7:16065200-16069000	Enhancers	NHLF	lung
10	chr7:16065200-16069200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:16065400-16068600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:16065400-16068600	Enhancers	NH-A	brain
13	chr7:16065400-16068800	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr7:16065400-16069400	Enhancers	NHDF-Ad	bronchial
15	chr7:16065400-16069600	Enhancers	Fetal Lung	lung
16	chr7:16065800-16068400	Enhancers	HUVEC	blood vessel
17	chr7:16066000-16068600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:16066000-16068600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:16066600-16074000	Weak transcription	Left Ventricle	heart
20	chr7:16066800-16067600	Enhancers	Adipose Nuclei	Adipose
21	chr7:16066800-16068000	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr7:16066800-16080000	Weak transcription	Right Atrium	heart
23	chr7:16067000-16068600	Enhancers	HSMM	muscle
24	chr7:16067000-16069000	Enhancers	Fetal Stomach	stomach
25	chr7:16067200-16067600	Enhancers	Fetal Brain Male	brain
26	chr7:16067200-16068800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr7:16067400-16067800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr7:16067400-16067800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
29	chr7:16067400-16068000	Enhancers	Fetal Heart	heart
30	chr7:16067400-16068400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr7:16067400-16068400	Weak transcription	Aorta	Aorta
32	chr7:16067400-16072600	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links