Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10435062	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10487901	0.85[ASN][1000 genomes]
rs10950596	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10950597	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11761043	0.90[ASN][1000 genomes]
rs12666927	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13247199	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1406102	0.89[ASN][1000 genomes]
rs1528146	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17354756	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2030972	0.82[EUR][1000 genomes]
rs2389574	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35006616	0.88[EUR][1000 genomes]
rs4721468	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4721470	0.83[ASN][1000 genomes]
rs6461215	0.90[ASN][1000 genomes]
rs6944852	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs758704	0.98[ASN][1000 genomes]
rs7787774	0.89[ASN][1000 genomes]
rs7789550	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs887460	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs998285	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv517991	chr7:16042596-16104327	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1030165	chr7:16043678-16085488	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv518740	chr7:16045794-16085019	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv527277	chr7:16045794-16085019	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv606311	chr7:16045794-16085019	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16050000-16065200	Weak transcription	Osteobl	bone
2	chr7:16058200-16065400	Weak transcription	Aorta	Aorta
3	chr7:16061200-16068800	Enhancers	Rectal Smooth Muscle	rectum
4	chr7:16061400-16064800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr7:16061800-16066000	Weak transcription	Fetal Muscle Leg	muscle
6	chr7:16061800-16066200	Weak transcription	Right Atrium	heart
7	chr7:16062400-16066800	Weak transcription	Adipose Nuclei	Adipose
8	chr7:16063200-16065200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:16063200-16065400	Weak transcription	Fetal Lung	lung
10	chr7:16064200-16064800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:16064200-16068600	Enhancers	Colon Smooth Muscle	Colon
12	chr7:16064400-16065400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr7:16064400-16065400	Weak transcription	Psoas Muscle	Psoas
14	chr7:16064600-16066800	Enhancers	Fetal Heart	heart
15	chr7:16064600-16069000	Enhancers	HSMMtube	muscle
16	chr7:16064600-16069200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search: