Variant report

Variant	rs758704
Chromosome Location	chr7:16064039-16064040
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10435062	0.88[ASN][1000 genomes]
rs10487901	0.87[ASN][1000 genomes]
rs10950597	0.90[ASN][1000 genomes]
rs11761043	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12666927	0.89[ASN][1000 genomes]
rs13247199	0.90[ASN][1000 genomes]
rs1406102	0.90[ASN][1000 genomes]
rs1528146	0.91[ASN][1000 genomes]
rs17354756	1.00[ASN][1000 genomes]
rs2389574	0.88[ASN][1000 genomes]
rs4721468	0.91[ASN][1000 genomes]
rs4721470	0.85[ASN][1000 genomes]
rs6461215	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6944852	1.00[ASN][1000 genomes]
rs6966682	0.98[ASN][1000 genomes]
rs7787774	0.90[ASN][1000 genomes]
rs7789550	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs887460	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv517991	chr7:16042596-16104327	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1030165	chr7:16043678-16085488	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv518740	chr7:16045794-16085019	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv527277	chr7:16045794-16085019	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv606311	chr7:16045794-16085019	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs758704	TMEM106B	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16050000-16065200	Weak transcription	Osteobl	bone
2	chr7:16058200-16065400	Weak transcription	Aorta	Aorta
3	chr7:16061200-16068800	Enhancers	Rectal Smooth Muscle	rectum
4	chr7:16061400-16064800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr7:16061800-16066000	Weak transcription	Fetal Muscle Leg	muscle
6	chr7:16061800-16066200	Weak transcription	Right Atrium	heart
7	chr7:16062400-16066800	Weak transcription	Adipose Nuclei	Adipose
8	chr7:16063200-16065200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:16063200-16065400	Weak transcription	Fetal Lung	lung
10	chr7:16063400-16064200	Weak transcription	Colon Smooth Muscle	Colon
11	chr7:16063400-16064600	Weak transcription	HSMMtube	muscle
12	chr7:16063600-16064600	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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