Variant report
| Variant | rs6947137 |
|---|---|
| Chromosome Location | chr7:14771108-14771109 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10085788 | 0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17168395 | 0.87[ASN][1000 genomes] |
| rs17168398 | 0.87[ASN][1000 genomes] |
| rs17168430 | 0.89[EUR][1000 genomes] |
| rs17168457 | 0.84[EUR][1000 genomes] |
| rs1723241 | 0.89[ASN][1000 genomes] |
| rs2098146 | 0.89[EUR][1000 genomes] |
| rs4721366 | 0.94[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4721367 | 0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs58371481 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs58583321 | 0.87[ASN][1000 genomes] |
| rs59520783 | 1.00[ASN][1000 genomes] |
| rs59587347 | 0.89[EUR][1000 genomes] |
| rs60293350 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6461124 | 0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6947687 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6948251 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6961059 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6971672 | 0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6978420 | 0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72506098 | 0.82[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs73682528 | 0.92[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs73682532 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949033 | chr7:14086106-14860323 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1031041 | chr7:14624127-14999201 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv538741 | chr7:14624127-14999201 | Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv887712 | chr7:14717872-14829858 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:14712800-14775200 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
| 2 | chr7:14763400-14774800 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
