Variant report

Variant	rs17168398
Chromosome Location	chr7:14800620-14800621
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10085788	0.87[ASN][1000 genomes]
rs1120331	1.00[JPT][hapmap]
rs17168395	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17168430	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17168435	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17168457	1.00[CEU][hapmap];0.94[YRI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1723241	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2098146	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4719423	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[YRI][hapmap]
rs4719424	1.00[CEU][hapmap];0.89[CHB][hapmap];0.83[YRI][hapmap]
rs4721366	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4721367	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4721374	1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[YRI][hapmap]
rs58583321	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59520783	0.87[ASN][1000 genomes]
rs59587347	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6461124	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6947137	0.87[ASN][1000 genomes]
rs6947687	0.87[ASN][1000 genomes]
rs6948251	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6961059	0.80[ASN][1000 genomes]
rs6971672	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6978420	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72506098	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73682528	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73682532	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv887712	chr7:14717872-14829858	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1020722	chr7:14792114-14871907	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14787400-14801400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr7:14794800-14807000	Weak transcription	HUVEC	blood vessel
3	chr7:14796000-14801800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:14799400-14802400	Enhancers	Osteobl	bone
5	chr7:14800000-14801000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:14800000-14802000	Enhancers	Rectal Smooth Muscle	rectum
7	chr7:14800000-14802600	Enhancers	Colon Smooth Muscle	Colon
8	chr7:14800200-14802800	Enhancers	Fetal Heart	heart
9	chr7:14800200-14804200	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr7:14800400-14802600	Enhancers	Brain Germinal Matrix	brain
11	chr7:14800600-14801600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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