Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10085788	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1120331	1.00[JPT][hapmap]
rs17168395	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17168398	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17168430	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17168435	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17168457	1.00[JPT][hapmap]
rs2098146	0.83[ASN][1000 genomes]
rs4719423	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs4719424	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs4721366	1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4721367	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4721374	1.00[JPT][hapmap]
rs58583321	0.97[ASN][1000 genomes]
rs59520783	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6461124	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6947137	0.89[ASN][1000 genomes]
rs6947687	0.89[ASN][1000 genomes]
rs6948251	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6961059	0.83[ASN][1000 genomes]
rs6971672	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6978420	0.89[ASN][1000 genomes]
rs72506098	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73682528	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73682532	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv887712	chr7:14717872-14829858	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14785800-14792200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:14787400-14792200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:14787400-14801400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:14787800-14792000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr7:14788200-14789600	Enhancers	HUVEC	blood vessel
6	chr7:14788200-14793600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:14788400-14794200	Weak transcription	HMEC	breast
8	chr7:14788600-14793800	Weak transcription	Osteobl	bone
9	chr7:14788600-14794400	Weak transcription	NHDF-Ad	bronchial
10	chr7:14788800-14793600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr7:14789000-14791000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:14789400-14790000	Weak transcription	Brain Germinal Matrix	brain
13	chr7:14789400-14790600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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