Variant report
| Variant | rs1120331 |
|---|---|
| Chromosome Location | chr7:14838576-14838577 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs17168395 | 1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs17168398 | 1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs17168430 | 1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs17168457 | 0.90[CHB][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1723241 | 1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs2098146 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4719423 | 0.90[CHB][hapmap] |
| rs4719424 | 0.89[CHB][hapmap] |
| rs4721366 | 1.00[JPT][hapmap];0.91[MEX][hapmap] |
| rs4721367 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4721374 | 0.90[CHB][hapmap];1.00[MEX][hapmap] |
| rs58371481 | 0.89[EUR][1000 genomes] |
| rs58583321 | 0.80[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs59587347 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs60293350 | 0.89[EUR][1000 genomes] |
| rs6461124 | 1.00[JPT][hapmap];0.91[MEX][hapmap];0.84[EUR][1000 genomes] |
| rs6947137 | 0.89[EUR][1000 genomes] |
| rs6947687 | 0.89[EUR][1000 genomes] |
| rs6948251 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6961059 | 0.89[EUR][1000 genomes] |
| rs6971672 | 1.00[JPT][hapmap];0.84[EUR][1000 genomes] |
| rs73682532 | 0.87[AMR][1000 genomes];0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949033 | chr7:14086106-14860323 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1031041 | chr7:14624127-14999201 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv538741 | chr7:14624127-14999201 | Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv1020722 | chr7:14792114-14871907 | Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv1024192 | chr7:14825622-14850257 | Enhancers Active TSS Flanking Active TSS Weak transcription | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 6 | esv9860 | chr7:14837460-14841270 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
