Variant report

Variant	rs6947509
Chromosome Location	chr7:25987772-25987773
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10261878	0.82[AMR][1000 genomes]
rs62446277	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6461895	0.86[EUR][1000 genomes]
rs6461897	0.86[EUR][1000 genomes]
rs66892818	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67612070	0.86[EUR][1000 genomes]
rs6953596	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6966574	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7787943	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7810027	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25980800-25987800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:25980800-25988200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:25980800-25989200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr7:25980800-25989400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:25981000-25987800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr7:25981000-25988600	Weak transcription	Fetal Intestine Small	intestine
7	chr7:25981000-25988800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:25981000-25989200	Weak transcription	HMEC	breast
9	chr7:25981600-25988800	Weak transcription	K562	blood
10	chr7:25984600-25989000	Weak transcription	Fetal Intestine Large	intestine
11	chr7:25984800-25987800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:25984800-25989200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr7:25985200-25989000	Weak transcription	Small Intestine	intestine
14	chr7:25985400-25987800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr7:25985400-25988400	Weak transcription	Stomach Mucosa	stomach
16	chr7:25985600-25987800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:25985600-25988200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr7:25985600-25988800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr7:25985600-25989200	Weak transcription	Fetal Stomach	stomach
20	chr7:25985600-25989400	Weak transcription	Esophagus	oesophagus
21	chr7:25985600-25989400	Weak transcription	Gastric	stomach
22	chr7:25985800-25988600	Weak transcription	NHEK	skin
23	chr7:25986000-25988400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr7:25986000-25989000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr7:25986000-25989400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr7:25986600-25988400	Weak transcription	Fetal Lung	lung
27	chr7:25987000-25988200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr7:25987000-25989000	Enhancers	Fetal Thymus	thymus
29	chr7:25987200-25988200	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr7:25987200-25989200	Flanking Active TSS	GM12878-XiMat	blood
31	chr7:25987200-25993200	Active TSS	Pancreas	Pancrea
32	chr7:25987400-25987800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr7:25987400-25987800	Enhancers	Duodenum Mucosa	Duodenum
34	chr7:25987400-25989000	Enhancers	H1 Cell Line	embryonic stem cell
35	chr7:25987400-25989000	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr7:25987400-25989200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr7:25987600-25988200	Bivalent Enhancer	Primary B cells from peripheral blood	blood

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