Variant report

Variant	rs6461895
Chromosome Location	chr7:25966546-25966547
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs4236321	0.84[AFR][1000 genomes]
rs4422683	0.85[AFR][1000 genomes]
rs4640955	0.86[AFR][1000 genomes]
rs4722545	0.84[AFR][1000 genomes]
rs4722546	0.84[AFR][1000 genomes]
rs4722547	0.84[AFR][1000 genomes]
rs4722548	0.89[AFR][1000 genomes]
rs62446277	0.86[EUR][1000 genomes]
rs6461897	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66892818	0.86[EUR][1000 genomes]
rs67612070	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6947509	0.86[EUR][1000 genomes]
rs6953596	0.86[EUR][1000 genomes]
rs7787943	0.88[EUR][1000 genomes]
rs7810017	0.85[AFR][1000 genomes]
rs7810027	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs997988	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25965400-25967400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:25965800-25966600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:25965800-25966800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr7:25965800-25966800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr7:25965800-25967200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:25965800-25967200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:25965800-25967200	Enhancers	NHEK	skin
8	chr7:25965800-25967400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr7:25966000-25966600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:25966200-25966600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:25966200-25966800	Enhancers	Stomach Mucosa	stomach
12	chr7:25966200-25967000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr7:25966200-25967200	Flanking Active TSS	K562	blood
14	chr7:25966400-25966800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr7:25966400-25967000	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr7:25966400-25967000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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