Variant report

Variant	rs4422683
Chromosome Location	chr7:25964768-25964769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10258485	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10951118	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10951119	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10951120	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10951121	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11760762	1.00[ASN][1000 genomes]
rs11983649	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12700679	1.00[ASN][1000 genomes]
rs12700680	1.00[ASN][1000 genomes]
rs12700681	1.00[ASN][1000 genomes]
rs12700682	1.00[ASN][1000 genomes]
rs13226851	1.00[ASN][1000 genomes]
rs13231897	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17729097	1.00[ASN][1000 genomes]
rs1966841	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2391172	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2391175	1.00[ASN][1000 genomes]
rs2893222	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35336240	1.00[ASN][1000 genomes]
rs4000713	0.82[ASN][1000 genomes]
rs4236321	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4412274	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4640955	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722543	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4722545	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722546	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722547	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722548	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722550	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4722551	0.93[ASN][1000 genomes]
rs6461895	0.85[AFR][1000 genomes]
rs6461896	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6461897	0.83[AFR][1000 genomes]
rs66700050	1.00[ASN][1000 genomes]
rs67494041	1.00[ASN][1000 genomes]
rs67612070	0.81[AFR][1000 genomes]
rs6954557	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6977848	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs735316	1.00[ASN][1000 genomes]
rs7803374	0.93[EUR][1000 genomes]
rs7805035	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7810017	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810027	0.83[AFR][1000 genomes]
rs997988	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs998357	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv830928	chr7:25820147-25965014	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25962000-25965800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:25962800-25965800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr7:25963200-25965800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:25963200-25965800	Weak transcription	NHEK	skin
5	chr7:25964200-25965400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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