Variant report

Variant	rs17729097
Chromosome Location	chr7:25948240-25948241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:25945944..25949352-chr7:25952890..25956249,3	K562	blood:
2	chr7:25946705..25948507-chr7:25987208..25989031,2	K562	blood:
3	chr7:25946107..25948389-chr7:26227906..26229965,2	K562	blood:

Variant related genes	Relation type
ENSG00000270933	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11760762	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12536040	0.84[CEU][hapmap]
rs12700679	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700680	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700681	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700682	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13223134	0.84[EUR][1000 genomes]
rs13226851	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13231897	1.00[ASN][1000 genomes]
rs2391175	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35336240	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4000713	0.82[ASN][1000 genomes]
rs4236321	1.00[CHD][hapmap];0.96[GIH][hapmap];0.86[MEX][hapmap];1.00[ASN][1000 genomes]
rs4412274	1.00[ASN][1000 genomes]
rs4422683	1.00[ASN][1000 genomes]
rs4640955	1.00[ASN][1000 genomes]
rs4722545	1.00[ASN][1000 genomes]
rs4722546	1.00[ASN][1000 genomes]
rs4722547	1.00[ASN][1000 genomes]
rs4722548	1.00[ASN][1000 genomes]
rs4722551	0.83[CHD][hapmap];0.83[MKK][hapmap];0.93[ASN][1000 genomes]
rs66700050	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67494041	1.00[ASN][1000 genomes]
rs6977848	1.00[ASN][1000 genomes]
rs735316	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810017	1.00[ASN][1000 genomes]
rs997988	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv830928	chr7:25820147-25965014	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv1792444	chr7:25902015-25964180	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3422821	chr7:25948204-25948576	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25945200-25948600	Enhancers	GM12878-XiMat	blood
2	chr7:25947000-25948400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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