Variant report

Variant	rs12536040
Chromosome Location	chr7:25936614-25936615
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000122566	Chromatin interaction
ENSG00000270933	Chromatin interaction
ENSG00000199085	Chromatin interaction
ENSG00000122565	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11376983	0.80[EUR][1000 genomes]
rs1868889	0.84[EUR][1000 genomes]
rs2391175	0.84[CEU][hapmap]
rs4722537	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73081653	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73081656	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs735876	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv830928	chr7:25820147-25965014	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv1792444	chr7:25902015-25964180	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25935200-25936800	Weak transcription	Liver	Liver
2	chr7:25935400-25936800	Weak transcription	Pancreas	Pancrea
3	chr7:25935400-25939600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:25935400-25939600	Weak transcription	Fetal Kidney	kidney
5	chr7:25935800-25936800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr7:25935800-25936800	Weak transcription	Adipose Nuclei	Adipose
7	chr7:25935800-25936800	Weak transcription	GM12878-XiMat	blood
8	chr7:25935800-25938400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:25936600-25936800	Active TSS	Ovary	ovary
10	chr7:25936600-25936800	Enhancers	Spleen	Spleen
11	chr7:25936600-25937200	Flanking Active TSS	K562	blood
12	chr7:25936600-25937400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
13	chr7:25936600-25937400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr7:25936600-25937400	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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