Variant report

Variant	rs73081656
Chromosome Location	chr7:25935747-25935748
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:25934479..25937155-chr7:26240343..26242310,2	K562	blood:
2	chr7:25929289..25930840-chr7:25934991..25937608,2	K562	blood:
3	chr7:25931505..25937179-chr7:26236822..26244263,8	MCF-7	breast:
4	chr7:25934013..25935952-chr7:26413712..26416136,2	MCF-7	breast:
5	chr7:25934539..25937076-chr7:26238878..26241529,2	K562	blood:
6	chr7:25934810..25937862-chr7:26237849..26240510,3	MCF-7	breast:
7	chr7:25935066..25937327-chr7:25986034..25989938,3	K562	blood:
8	chr7:25933954..25935974-chr7:26016586..26018998,2	MCF-7	breast:
9	chr7:25934733..25937653-chr7:26224119..26226349,2	K562	blood:
10	chr7:25932861..25935776-chr7:26190366..26192075,2	MCF-7	breast:
11	chr7:25929289..25931506-chr7:25934991..25936494,2	K562	blood:
12	chr7:25933522..25935904-chr7:26366723..26369511,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000270933	Chromatin interaction
ENSG00000122565	Chromatin interaction
ENSG00000225792	Chromatin interaction
ENSG00000122566	Chromatin interaction
ENSG00000050344	Chromatin interaction
ENSG00000199085	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11376983	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12536040	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1868889	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722537	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73081653	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs735876	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv830928	chr7:25820147-25965014	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv1792444	chr7:25902015-25964180	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25933400-25935800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
2	chr7:25934200-25935800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
3	chr7:25934600-25935800	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr7:25935000-25935800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr7:25935000-25935800	Active TSS	H1 Cell Line	embryonic stem cell
6	chr7:25935000-25935800	Active TSS	H9 Cell Line	embryonic stem cell
7	chr7:25935000-25935800	Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr7:25935000-25935800	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr7:25935000-25935800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:25935200-25936800	Weak transcription	Liver	Liver
11	chr7:25935400-25935800	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr7:25935400-25935800	Enhancers	Ovary	ovary
13	chr7:25935400-25936000	Enhancers	K562	blood
14	chr7:25935400-25936600	Weak transcription	Spleen	Spleen
15	chr7:25935400-25936800	Weak transcription	Pancreas	Pancrea
16	chr7:25935400-25939600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr7:25935400-25939600	Weak transcription	Fetal Kidney	kidney
18	chr7:25935600-25935800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr7:25935600-25935800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
20	chr7:25935600-25935800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
21	chr7:25935600-25935800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr7:25935600-25935800	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
23	chr7:25935600-25935800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr7:25935600-25935800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr7:25935600-25935800	Enhancers	GM12878-XiMat	blood
26	chr7:25935600-25936000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr7:25935600-25936600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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