Variant report

Variant	rs11376983
Chromosome Location	chr7:25926070-25926071
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12536040	0.80[EUR][1000 genomes]
rs1868889	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4722537	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73081653	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73081656	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs735876	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv830928	chr7:25820147-25965014	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv1792444	chr7:25902015-25964180	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25921600-25934000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:25922000-25934800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:25925400-25927200	Enhancers	Fetal Muscle Leg	muscle
4	chr7:25925400-25927200	Enhancers	HSMMtube	muscle
5	chr7:25925600-25926400	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr7:25925600-25926600	Weak transcription	Psoas Muscle	Psoas
7	chr7:25925600-25927200	Enhancers	Fetal Heart	heart
8	chr7:25925600-25928400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:25926000-25926400	Active TSS	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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