Variant report

Variant	rs13226851
Chromosome Location	chr7:25988899-25988900
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HNRNPA2B1-10	chr7:25988277-25989023	ENSG00000270933.1

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11760762	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700679	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700680	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13223134	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13231897	1.00[ASN][1000 genomes]
rs17729097	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2391175	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35336240	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4000713	0.82[ASN][1000 genomes]
rs4236321	1.00[ASN][1000 genomes]
rs4412274	1.00[ASN][1000 genomes]
rs4422683	1.00[ASN][1000 genomes]
rs4640955	1.00[ASN][1000 genomes]
rs4722545	1.00[ASN][1000 genomes]
rs4722546	1.00[ASN][1000 genomes]
rs4722547	1.00[ASN][1000 genomes]
rs4722548	1.00[ASN][1000 genomes]
rs4722551	0.93[ASN][1000 genomes]
rs66700050	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67494041	1.00[ASN][1000 genomes]
rs6977848	1.00[ASN][1000 genomes]
rs735316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810017	1.00[ASN][1000 genomes]
rs997988	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv606432	chr7:25988185-26223294	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	102 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25980800-25989200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr7:25980800-25989400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:25981000-25989200	Weak transcription	HMEC	breast
4	chr7:25984600-25989000	Weak transcription	Fetal Intestine Large	intestine
5	chr7:25984800-25989200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:25985200-25989000	Weak transcription	Small Intestine	intestine
7	chr7:25985600-25989200	Weak transcription	Fetal Stomach	stomach
8	chr7:25985600-25989400	Weak transcription	Esophagus	oesophagus
9	chr7:25985600-25989400	Weak transcription	Gastric	stomach
10	chr7:25986000-25989000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:25986000-25989400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr7:25987000-25989000	Enhancers	Fetal Thymus	thymus
13	chr7:25987200-25989200	Flanking Active TSS	GM12878-XiMat	blood
14	chr7:25987200-25993200	Active TSS	Pancreas	Pancrea
15	chr7:25987400-25989000	Enhancers	H1 Cell Line	embryonic stem cell
16	chr7:25987400-25989000	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr7:25987400-25989200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:25987800-25989000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr7:25987800-25989000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr7:25987800-25989200	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr7:25987800-25989200	Enhancers	HepG2	liver
22	chr7:25987800-25989400	Enhancers	H9 Cell Line	embryonic stem cell
23	chr7:25987800-25992800	Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr7:25988000-25989600	Weak transcription	Right Atrium	heart
25	chr7:25988200-25989200	Active TSS	Rectal Mucosa Donor 29	rectum
26	chr7:25988200-25989400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr7:25988200-25989400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
28	chr7:25988200-25990000	Flanking Active TSS	Liver	Liver
29	chr7:25988200-25990200	Flanking Active TSS	Duodenum Mucosa	Duodenum
30	chr7:25988400-25989000	Bivalent Enhancer	Primary T cells from cord blood	blood
31	chr7:25988400-25989000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr7:25988400-25989200	Enhancers	Fetal Lung	lung
33	chr7:25988400-25989400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr7:25988400-25989400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr7:25988400-25989400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr7:25988400-25989400	Enhancers	Stomach Mucosa	stomach
37	chr7:25988400-25990200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr7:25988600-25989000	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr7:25988600-25989200	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr7:25988600-25989200	Enhancers	NHEK	skin
41	chr7:25988600-25989400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr7:25988600-25989400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr7:25988600-25989400	Bivalent Enhancer	Fetal Muscle Leg	muscle
44	chr7:25988600-25989600	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr7:25988600-25989600	Enhancers	Lung	lung
46	chr7:25988800-25989000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr7:25988800-25989000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr7:25988800-25989000	Flanking Active TSS	Colonic Mucosa	Colon
49	chr7:25988800-25989000	Flanking Active TSS	Fetal Intestine Small	intestine
50	chr7:25988800-25989000	Enhancers	K562	blood

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