Variant report

Variant	rs997988
Chromosome Location	chr7:25979194-25979195
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10258485	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10951118	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10951119	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10951120	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10951121	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11760762	1.00[ASN][1000 genomes]
rs11983649	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12700679	1.00[ASN][1000 genomes]
rs12700680	1.00[ASN][1000 genomes]
rs12700681	1.00[ASN][1000 genomes]
rs12700682	1.00[ASN][1000 genomes]
rs13226851	1.00[ASN][1000 genomes]
rs13231897	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17729097	1.00[ASN][1000 genomes]
rs1966841	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2391172	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2391175	1.00[ASN][1000 genomes]
rs2893222	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35336240	1.00[ASN][1000 genomes]
rs4000713	0.82[ASN][1000 genomes]
rs4236321	0.86[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4412274	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4422683	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4640955	0.89[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722543	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4722545	0.87[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722546	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722547	0.88[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722548	0.80[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722550	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4722551	0.93[ASN][1000 genomes]
rs6461895	0.87[AFR][1000 genomes]
rs6461896	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6461897	0.86[AFR][1000 genomes]
rs66700050	1.00[ASN][1000 genomes]
rs67494041	1.00[ASN][1000 genomes]
rs67612070	0.82[AFR][1000 genomes]
rs6954557	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6977848	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs735316	1.00[ASN][1000 genomes]
rs7803374	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7805035	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7810017	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810027	0.86[AFR][1000 genomes]
rs998357	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25976600-25979800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:25978800-25979800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr7:25979000-25980800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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