Variant report
| Variant | rs6461897 |
|---|---|
| Chromosome Location | chr7:25975351-25975352 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:25973340..25976295-chr7:25979441..25982390,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs4236321 | 0.82[AFR][1000 genomes] |
| rs4422683 | 0.83[AFR][1000 genomes] |
| rs4640955 | 0.84[AFR][1000 genomes] |
| rs4722545 | 0.82[AFR][1000 genomes] |
| rs4722546 | 0.82[AFR][1000 genomes] |
| rs4722547 | 0.82[AFR][1000 genomes] |
| rs4722548 | 0.87[AFR][1000 genomes] |
| rs62446277 | 0.86[EUR][1000 genomes] |
| rs6461895 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs66892818 | 0.86[EUR][1000 genomes] |
| rs67612070 | 0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6947509 | 0.86[EUR][1000 genomes] |
| rs6953596 | 0.86[EUR][1000 genomes] |
| rs7787943 | 0.88[EUR][1000 genomes] |
| rs7810017 | 0.84[AFR][1000 genomes] |
| rs7810027 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs997988 | 0.86[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016813 | chr7:25405859-26150509 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 108 gene(s) | inside rSNPs | diseases |
| 2 | nsv538803 | chr7:25405859-26150509 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 108 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:25967200-25979000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
