Variant report

Variant	rs4640955
Chromosome Location	chr7:25963734-25963735
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:25961663..25964042-chr7:26239892..26242188,2	MCF-7	breast:
2	chr7:25956397..25958316-chr7:25961435..25964267,2	K562	blood:
3	chr7:25961990..25963849-chr7:25966309..25968265,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122565	Chromatin interaction
ENSG00000122566	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10258485	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10951118	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10951119	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10951120	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10951121	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11760762	1.00[ASN][1000 genomes]
rs11983649	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12700679	1.00[ASN][1000 genomes]
rs12700680	1.00[ASN][1000 genomes]
rs12700681	1.00[ASN][1000 genomes]
rs12700682	1.00[ASN][1000 genomes]
rs13226851	1.00[ASN][1000 genomes]
rs13231897	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17729097	1.00[ASN][1000 genomes]
rs1966841	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2076881	1.00[JPT][hapmap]
rs2391172	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2391175	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2893222	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35336240	1.00[ASN][1000 genomes]
rs4000713	0.82[ASN][1000 genomes]
rs4236321	0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4412274	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4422683	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722543	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4722545	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722546	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722547	0.88[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722548	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722550	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4722551	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs6461895	0.86[AFR][1000 genomes]
rs6461896	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6461897	0.84[AFR][1000 genomes]
rs66700050	1.00[ASN][1000 genomes]
rs67494041	1.00[ASN][1000 genomes]
rs67612070	0.81[AFR][1000 genomes]
rs6954557	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6963094	1.00[CHB][hapmap]
rs6977848	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs735316	1.00[ASN][1000 genomes]
rs7803374	0.93[EUR][1000 genomes]
rs7805035	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7810017	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810027	0.84[AFR][1000 genomes]
rs997988	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs998357	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv830928	chr7:25820147-25965014	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv1792444	chr7:25902015-25964180	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25961000-25964000	Enhancers	HMEC	breast
2	chr7:25962000-25965800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:25962800-25965800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr7:25963000-25964200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:25963200-25965800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:25963200-25965800	Weak transcription	NHEK	skin
7	chr7:25963600-25964000	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links