Variant report

Variant	rs2076881
Chromosome Location	chr7:26007702-26007703
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:25989287..25991159-chr7:26005525..26008414,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000199085	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10249225	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10252380	0.84[EUR][1000 genomes]
rs10267565	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12535387	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13223134	1.00[ASN][1000 genomes]
rs2391213	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28360688	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2893235	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4515452	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4640955	1.00[JPT][hapmap]
rs4719843	0.82[EUR][1000 genomes]
rs4719844	0.82[EUR][1000 genomes]
rs4722545	1.00[JPT][hapmap]
rs4722548	1.00[JPT][hapmap]
rs4722552	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722561	0.83[EUR][1000 genomes]
rs6946189	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968046	0.85[EUR][1000 genomes]
rs6977848	1.00[JPT][hapmap]
rs73089457	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs766839	0.82[EUR][1000 genomes]
rs9638829	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv606432	chr7:25988185-26223294	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	102 gene(s)	inside rSNPs	diseases
4	nsv887848	chr7:26000137-26059739	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv606433	chr7:26007582-26050920	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26002800-26009000	Weak transcription	Right Atrium	heart
2	chr7:26006000-26009000	Flanking Active TSS	GM12878-XiMat	blood
3	chr7:26006200-26008800	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr7:26006600-26008800	Enhancers	Pancreas	Pancrea
5	chr7:26006600-26009000	Enhancers	Fetal Muscle Leg	muscle
6	chr7:26006800-26008000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr7:26006800-26008000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr7:26007000-26007800	Bivalent Enhancer	Duodenum Mucosa	Duodenum
9	chr7:26007000-26008000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
10	chr7:26007000-26008800	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr7:26007000-26008800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr7:26007200-26007800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr7:26007200-26008000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
14	chr7:26007200-26008400	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr7:26007200-26008800	Enhancers	Spleen	Spleen
16	chr7:26007200-26009000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr7:26007200-26009200	Enhancers	Fetal Muscle Trunk	muscle
18	chr7:26007400-26007800	Weak transcription	Gastric	stomach
19	chr7:26007400-26008000	Enhancers	Primary B cells from peripheral blood	blood
20	chr7:26007400-26008400	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr7:26007400-26008800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr7:26007400-26009600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr7:26007600-26008600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood

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