Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:25990219..25991822-chr7:25999068..26002038,2	K562	blood:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10249225	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10252380	0.83[EUR][1000 genomes]
rs10267565	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12535387	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13223134	1.00[ASN][1000 genomes]
rs2076881	0.94[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2391175	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[YRI][hapmap]
rs2391213	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28360688	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2893235	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4236321	1.00[CHD][hapmap]
rs4515452	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4640955	1.00[CHB][hapmap]
rs4719843	0.81[EUR][1000 genomes]
rs4719844	0.81[EUR][1000 genomes]
rs4722545	1.00[CHB][hapmap]
rs4722548	1.00[CHB][hapmap]
rs4722551	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap]
rs4722552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722561	0.83[EUR][1000 genomes]
rs6963094	1.00[CHB][hapmap]
rs6968046	0.85[EUR][1000 genomes]
rs6977848	1.00[CHB][hapmap]
rs73089457	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs766839	0.82[EUR][1000 genomes]
rs9638829	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv606432	chr7:25988185-26223294	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	102 gene(s)	inside rSNPs	diseases
4	nsv887848	chr7:26000137-26059739	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25994600-26001400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:25999000-26002400	Weak transcription	Spleen	Spleen
3	chr7:25999200-26000200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:25999200-26001800	Weak transcription	Pancreas	Pancrea
5	chr7:25999200-26004000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr7:25999400-26002600	Weak transcription	Liver	Liver
7	chr7:25999600-26003400	Enhancers	GM12878-XiMat	blood

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