Variant report

Variant	rs13223134
Chromosome Location	chr7:25997164-25997165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10267565	1.00[ASN][1000 genomes]
rs11760762	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12700679	0.83[EUR][1000 genomes]
rs12700680	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12700681	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12700682	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13226851	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17729097	0.84[EUR][1000 genomes]
rs2076881	1.00[ASN][1000 genomes]
rs2391175	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2391213	1.00[ASN][1000 genomes]
rs28360688	1.00[ASN][1000 genomes]
rs35336240	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4722552	1.00[ASN][1000 genomes]
rs66700050	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6946189	1.00[ASN][1000 genomes]
rs735316	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv606432	chr7:25988185-26223294	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	102 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25992800-25998800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:25993200-25998600	Weak transcription	HepG2	liver
3	chr7:25994000-25998800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:25994200-25998800	Weak transcription	GM12878-XiMat	blood
5	chr7:25994600-25998400	Weak transcription	Pancreas	Pancrea
6	chr7:25994600-26001400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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