Variant report

Variant	rs10267565
Chromosome Location	chr7:26010246-26010247
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10249225	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10252380	0.85[EUR][1000 genomes]
rs12535387	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13223134	1.00[ASN][1000 genomes]
rs2076881	0.89[CEU][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2391175	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs2391213	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28360688	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2893235	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4515452	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4640955	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4719843	0.82[EUR][1000 genomes]
rs4719844	0.82[EUR][1000 genomes]
rs4722545	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4722548	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4722551	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs4722552	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722561	0.84[EUR][1000 genomes]
rs6946189	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6963094	1.00[CHB][hapmap]
rs6968046	0.86[EUR][1000 genomes]
rs6977848	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73089457	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs766839	0.83[EUR][1000 genomes]
rs9638829	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv606432	chr7:25988185-26223294	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	102 gene(s)	inside rSNPs	diseases
4	nsv887848	chr7:26000137-26059739	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv606433	chr7:26007582-26050920	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26009400-26010800	Weak transcription	GM12878-XiMat	blood
2	chr7:26010000-26010400	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr7:26010200-26010400	Flanking Active TSS	Duodenum Mucosa	Duodenum
4	chr7:26010200-26010400	Enhancers	Pancreas	Pancrea
5	chr7:26010200-26010400	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
6	chr7:26010200-26011200	Enhancers	Fetal Muscle Leg	muscle

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