Variant report

Variant	rs735316
Chromosome Location	chr7:25988185-25988186
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11760762	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700679	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700680	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13223134	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13226851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13231897	1.00[ASN][1000 genomes]
rs17729097	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2391175	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35336240	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4000713	0.82[ASN][1000 genomes]
rs4236321	1.00[CHD][hapmap];0.92[GIH][hapmap];0.81[MEX][hapmap];1.00[ASN][1000 genomes]
rs4412274	1.00[ASN][1000 genomes]
rs4422683	1.00[ASN][1000 genomes]
rs4640955	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4722545	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4722546	1.00[ASN][1000 genomes]
rs4722547	1.00[ASN][1000 genomes]
rs4722548	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4722551	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs66700050	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67494041	1.00[ASN][1000 genomes]
rs6963094	1.00[CHB][hapmap]
rs6977848	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7810017	1.00[ASN][1000 genomes]
rs997988	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv606432	chr7:25988185-26223294	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	102 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25980800-25988200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:25980800-25989200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr7:25980800-25989400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:25981000-25988600	Weak transcription	Fetal Intestine Small	intestine
5	chr7:25981000-25988800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:25981000-25989200	Weak transcription	HMEC	breast
7	chr7:25981600-25988800	Weak transcription	K562	blood
8	chr7:25984600-25989000	Weak transcription	Fetal Intestine Large	intestine
9	chr7:25984800-25989200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:25985200-25989000	Weak transcription	Small Intestine	intestine
11	chr7:25985400-25988400	Weak transcription	Stomach Mucosa	stomach
12	chr7:25985600-25988200	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr7:25985600-25988800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:25985600-25989200	Weak transcription	Fetal Stomach	stomach
15	chr7:25985600-25989400	Weak transcription	Esophagus	oesophagus
16	chr7:25985600-25989400	Weak transcription	Gastric	stomach
17	chr7:25985800-25988600	Weak transcription	NHEK	skin
18	chr7:25986000-25988400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr7:25986000-25989000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr7:25986000-25989400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr7:25986600-25988400	Weak transcription	Fetal Lung	lung
22	chr7:25987000-25988200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr7:25987000-25989000	Enhancers	Fetal Thymus	thymus
24	chr7:25987200-25988200	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr7:25987200-25989200	Flanking Active TSS	GM12878-XiMat	blood
26	chr7:25987200-25993200	Active TSS	Pancreas	Pancrea
27	chr7:25987400-25989000	Enhancers	H1 Cell Line	embryonic stem cell
28	chr7:25987400-25989000	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr7:25987400-25989200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr7:25987600-25988200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
31	chr7:25987800-25988200	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr7:25987800-25988200	Active TSS	Duodenum Mucosa	Duodenum
33	chr7:25987800-25988200	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr7:25987800-25988400	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr7:25987800-25988400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr7:25987800-25989000	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr7:25987800-25989000	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr7:25987800-25989200	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr7:25987800-25989200	Enhancers	HepG2	liver
40	chr7:25987800-25989400	Enhancers	H9 Cell Line	embryonic stem cell
41	chr7:25987800-25992800	Active TSS	Pancreatic Islets	Pancreatic Islet
42	chr7:25988000-25988200	Active TSS	Liver	Liver
43	chr7:25988000-25988400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr7:25988000-25988400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr7:25988000-25989600	Weak transcription	Right Atrium	heart

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