Variant report

Variant	rs2893222
Chromosome Location	chr7:25980231-25980232
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:25895415..25898294-chr7:25979885..25982093,2	K562	blood:
2	chr7:25979383..25981909-chr7:26003195..26005485,2	MCF-7	breast:
3	chr7:25973340..25976295-chr7:25979441..25982390,2	K562	blood:
4	chr7:25965594..25967827-chr7:25979704..25981688,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10258485	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10951118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10951119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10951120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10951121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11983649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13231897	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1966841	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2391172	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4236321	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4412274	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4422683	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4640955	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4722543	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4722545	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4722546	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4722547	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4722548	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4722550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6461896	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6954557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6977848	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7803374	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7805035	0.89[EUR][1000 genomes]
rs7810017	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs997988	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs998357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25979000-25980800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:25979200-25980400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:25979200-25981400	Enhancers	Fetal Thymus	thymus
4	chr7:25979400-25980600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr7:25979600-25980400	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr7:25979600-25980800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:25979600-25981000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr7:25979600-25981000	Enhancers	Primary hematopoietic stem cells	blood
9	chr7:25979600-25981000	Flanking Active TSS	K562	blood
10	chr7:25979800-25980400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr7:25979800-25980600	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr7:25979800-25980600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr7:25979800-25980800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr7:25979800-25980800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:25979800-25980800	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr7:25979800-25980800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr7:25979800-25980800	Enhancers	Fetal Lung	lung
18	chr7:25979800-25980800	Enhancers	Thymus	Thymus
19	chr7:25979800-25981000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr7:25979800-25981000	Flanking Active TSS	NHEK	skin
21	chr7:25980000-25980400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr7:25980000-25980400	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr7:25980000-25980600	Flanking Bivalent TSS/Enh	Dnd41	blood
24	chr7:25980000-25980800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr7:25980000-25980800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr7:25980000-25980800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
27	chr7:25980000-25981000	Enhancers	Primary T cells from cord blood	blood
28	chr7:25980000-25981000	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr7:25980000-25981000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
30	chr7:25980200-25980400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr7:25980200-25980400	Enhancers	Pancreas	Pancrea
32	chr7:25980200-25980400	Enhancers	Stomach Mucosa	stomach
33	chr7:25980200-25980600	Active TSS	Duodenum Smooth Muscle	Duodenum
34	chr7:25980200-25980800	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr7:25980200-25980800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
36	chr7:25980200-25980800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr7:25980200-25980800	Active TSS	Colonic Mucosa	Colon
38	chr7:25980200-25980800	Flanking Active TSS	Duodenum Mucosa	Duodenum
39	chr7:25980200-25981000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr7:25980200-25981000	Flanking Active TSS	GM12878-XiMat	blood
41	chr7:25980200-25981000	Flanking Active TSS	HMEC	breast

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